Insertion junction: CLIP2.061487_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.061487
Chromosome:chromosome 12
Location:2547324
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g506900 (1 of 1) PTHR21568:SF0 - TRNA PSEUDOURIDINE SYNTHASE PUS10-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTATCAGCTCACCCCCAGCCCCCTGCACAGCTACCCTGCTCCCAGTCGCG
Internal bar code:AAATTTGGTGAGTTTTGTTAAT

Confirmation - LEAP-Seq

LEAP-Seq distance:835
LEAP-Seq percent confirming:76.9231
LEAP-Seq n confirming:30
LEAP-Seq n nonconfirming:9
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:TGAAGCAAGCCTGTAAGCGA
Suggested primer 2:CACGGGTAGGGATATCGCAC