Insertion junction: CLIP2.061585_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.061585
Chromosome:chromosome 3
Location:8089669
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g201100 FTSHi1,FTSHI4,FTSHi4,FHL1,FHL6 (1 of 1) PTHR23076//PTHR23076:SF61 - METALLOPROTEASE M41 FTSH // SUBFAMILY NOT NAMED; Chloroplast-import FtsH-like ATPase 5'UTR
Cre03.g201150 (1 of 2) 2.5.1.117 - Homogentisate solanesyltransferase / HST 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTGCAAACTGTCAATTTGCAGGATGGTTTTCACCTCGCAATGAAGCGTTA
Internal bar code:CATTAGTGCCCTATGCAGGCGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1000
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:TGTCAGCGAGTTGAGTTGCA
Suggested primer 2:GAAGAGTCGAACAAGGGGCA