Insertion junction: CLIP2.061587_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.061587
Chromosome:chromosome 11
Location:918978
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467656 (1 of 9) IPR007112//IPR009009 - Expansin/pollen allergen, DPBB domain // RlpA-like double-psi beta-barrel domain 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTCTTATGACGATAGTTTAAGCTTAATATTATTGCTTGTATTCAAGCC
Internal bar code:TGGCGTGCCCCACCGAGACATG

Confirmation - LEAP-Seq

LEAP-Seq distance:805
LEAP-Seq percent confirming:61.5385
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:10
LEAP-Seq n unique pos:26

Suggested primers for confirmation by PCR

Suggested primer 1:TCTCCACCCCCAAAATACGC
Suggested primer 2:ACTGACAGCATCGACAGCAA