Insertion junction: CLIP2.061936_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.061936
Chromosome:chromosome 3
Location:9196541
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g199311 VPS16,VCL1 VPS16-like protein; (1 of 1) PTHR12811//PTHR12811:SF0 - VACUOLAR PROTEIN SORTING VPS16 // VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 16 HOMOLOG 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTCCCCACGTTCGACACATGCGCACTGCCACCGCTGGGCTCTCTAGCGC
Internal bar code:GAGCGTGTGAATGGGAGATGGG

Confirmation - LEAP-Seq

LEAP-Seq distance:3277
LEAP-Seq percent confirming:97.3684
LEAP-Seq n confirming:37
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:ACCGTATACGCTACGCACAG
Suggested primer 2:CAAGGTAGGTCACTGCAGCA