Insertion junction: CLIP2.062004_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.062004
Chromosome:chromosome 8
Location:3465487
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g800945 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGAGTTTGTCCTCACGTGTTTCTGCAGCGCACACATTCTTAAACTCACGC
Internal bar code:TTTGTTGATTATGTCTTTAATC

Confirmation - LEAP-Seq

LEAP-Seq distance:1868
LEAP-Seq percent confirming:96.4286
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:GCGAGTTCTCCACCAAGTCA
Suggested primer 2:TCAAGCGCCCTTTCAGTTCA