Insertion junction: CLIP2.062012_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.062012
Chromosome:chromosome 9
Location:4606407
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g401589 (1 of 2) IPR000104//IPR002893//IPR003072 - Antifreeze protein, type I // Zinc finger, MYND-type // Orphan nuclear receptor, NOR1 type 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACAACAGGTTATTTTTACGCGTGCAAAGATGGTGTGCCGCTTCCCCGTG
Internal bar code:ATCACTTGAGAGGGAGGCCCAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1629
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:7
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:7

Suggested primers for confirmation by PCR

Suggested primer 1:AACATGTGTCTAGCAGGGCC
Suggested primer 2:CTGAGAGTATCCGAGCGCAG