Insertion junction: CLIP2.062022_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.062022
Chromosome:chromosome 3
Location:4976770
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g179350 MFT16 Major facilitator superfamily transporter; (1 of 1) PF03825//PF07690 - Nucleoside H+ symporter (Nuc_H_symport) // Major Facilitator Superfamily (MFS_1) outside_mRNA
Cre03.g179400 MFT17 Major facilitator superfamily transporter; (1 of 22) IPR011701//IPR020846 - Major facilitator superfamily // Major facilitator superfamily domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTAAGCGTCTGTGCACTGTACGCACATTTGGCCAGCGACACGCTCACTG
Internal bar code:GCGCAGGACCGGGCAGCGGATA

Confirmation - LEAP-Seq

LEAP-Seq distance:1542
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GCCTGACACTGAAGCAGTCT
Suggested primer 2:GTAGGGTGTGACGGTGGAAG