Insertion junction: CLIP2.062047_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.062047
Chromosome:chromosome 16
Location:3896383
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g689100 PUS6 (1 of 2) 5.4.99.23 - 23S rRNA pseudouridine(1911/1915/1917) synthase; RNA pseudouridine synthase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCTTGCTCATTGCCTGTCCATCACGAACCTCCACGCGTCAATCTTTCAC
Internal bar code:GGTCTCCTTCCCTTGAGATTAC

Confirmation - LEAP-Seq

LEAP-Seq distance:2624
LEAP-Seq percent confirming:86.2069
LEAP-Seq n confirming:50
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:58

Suggested primers for confirmation by PCR

Suggested primer 1:GGAGGCCAGGTGAGTTTACC
Suggested primer 2:CAATACCCGCAGACCCACTT