Insertion junction: CLIP2.062116_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.062116
Chromosome:plastome
Location:174589
Confidence (%):40
Locus systematic id Locus common name Defline Feature
CreCp.g802329 ChreCp064,psbD,2716961 (1 of 1) K02706 - photosystem II P680 reaction center D2 protein (psbD); photosystem II protein D2 CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTGCTGCTGAAGACCCTGAATTCGAAACATTCTACACTAAAAACATTCTT
Internal bar code:GGATAATCGAGTTTCTGGTCTA

Confirmation - LEAP-Seq

LEAP-Seq distance:743
LEAP-Seq percent confirming:20.0
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TTCGTGTCGCACCCACTTAA
Suggested primer 2:TGACTGGCTTCGTCAAGACC