Insertion junction: CLIP2.062152_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.062152
Chromosome:chromosome 14
Location:3401939
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre14.g629960 (1 of 2) 2.3.2.15 - Glutathione gamma-glutamylcysteinyltransferase / Phytochelatin synthase intron
lncRNA_TCONS_00220894 intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGCGAAGCGACTGCACAGTTGCGGTCCCGCGACTGCGTGTCCCTTCTTGG
Internal bar code:GCCCTGTATCACGCCAGGTCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:54
LEAP-Seq percent confirming:8.69565
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:21
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:TGCGGTGGATTGGATTGGAA
Suggested primer 2:CTGCCAGAATGCGTACATGC