Insertion junction: CLIP2.062223_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.062223
Chromosome:chromosome 12
Location:8857894
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g546400 DLR2,DLC7b,DCL7B,LC7B (1 of 2) K10419 - dynein light chain roadblock-type (DYNLRB, DNCL2); Roadblock/LC7 Family Light Chain 5'UTR
Cre12.g546450 (1 of 1) PTHR12472//PTHR12472:SF0 - RAB3-GAP REGULATORY DOMAIN // RAB3 GTPASE-ACTIVATING PROTEIN NON-CATALYTIC SUBUNIT outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCCAGACTACCTAACGCAAATAAGACGTTCACTGCAAGCCAGACCTACCA
Internal bar code:AGTATAACGAGTCTGTTACGTT

Confirmation - LEAP-Seq

LEAP-Seq distance:2145
LEAP-Seq percent confirming:18.75
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:26
LEAP-Seq n unique pos:32

Suggested primers for confirmation by PCR

Suggested primer 1:CGGTTTCCCTCGTGACAGAA
Suggested primer 2:CTGCTTGTATTGATGGCGCC