Insertion junction: CLIP2.062257_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.062257
Chromosome:chromosome 17
Location:2866867
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g718800 MPA14 calcineurin-like phosphoesterase family protein; (1 of 3) PTHR11668//PTHR11668:SF267 - SERINE/THREONINE PROTEIN PHOSPHATASE // SUBFAMILY NOT NAMED 3'UTR
Cre17.g718850 RFA1,RPA70A (1 of 1) PTHR23273//PTHR23273:SF12 - REPLICATION FACTOR A 1, RFA1 // REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT C-RELATED; Replication protein A, 70 kDa DNA-binding subunit gene_edge/mRNA_edge/5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAGTCCTCGTGCTGCGCTCCCCAACGCCGATCCCACCTCGTGCTGCGCTC
Internal bar code:TTAGCTTTAAAGCCCGCCTCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1649
LEAP-Seq percent confirming:96.9697
LEAP-Seq n confirming:32
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:CGTTACGGTACTGCAGGTGT
Suggested primer 2:CCGGTCGTTAACCTGGTTGA