Insertion junction: CLIP2.062342_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.062342
Chromosome:chromosome 10
Location:3838851
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g445900 (1 of 1) PF00226//PF14901 - DnaJ domain (DnaJ) // Cleavage inducing molecular chaperone (Jiv90) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGACCCCATGTCCCAAAACCTCCCGACCCCCCCTCCGGACCGACCGACCG
Internal bar code:GAGTGGTAAGTGCCAATAGTTA

Confirmation - LEAP-Seq

LEAP-Seq distance:1373
LEAP-Seq percent confirming:49.0909
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:28
LEAP-Seq n unique pos:55

Suggested primers for confirmation by PCR

Suggested primer 1:GTAGGCGGTGGGTGAAGATG
Suggested primer 2:GCGCTCACAGCCACATAATG