Insertion junction: CLIP2.062363_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.062363
Chromosome:chromosome 3
Location:1293614
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g150151 NRT2E Nitrate/nitrite transporter; (1 of 5) PTHR23515:SF2 - HIGH AFFINITY NITRATE TRANSPORTER 2.3-RELATED 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGACAAAACTCTTCGCGCAAGATTTGTCAGGGTCAAAACTTCACTAGTCG
Internal bar code:TTATGGGTCTCCTGATCCCGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:2544
LEAP-Seq percent confirming:98.2143
LEAP-Seq n confirming:55
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:56

Suggested primers for confirmation by PCR

Suggested primer 1:CTCACCCCTGCTCCAGAAAG
Suggested primer 2:ACACACACACACACACCTGT