Insertion junction: CLIP2.062408_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.062408
Chromosome:chromosome 3
Location:4117407
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g172600 (1 of 1) IPR000104//IPR001841//IPR011990//IPR013083 - Antifreeze protein, type I // Zinc finger, RING-type // Tetratricopeptide-like helical domain // Zinc finger, RING/FYVE/PHD-type 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCTGACTGCGAATGCGCAGGGTTGGGCCCACCTAACCGAGCTCTGTACA
Internal bar code:ACGTGACCTATTGTGTATTCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2448
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:27

Suggested primers for confirmation by PCR

Suggested primer 1:AAGTAGTAGTCGGCGGAGGT
Suggested primer 2:CTGATGTTGGTGCGGAGGT