Insertion junction: CLIP2.062409_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.062409
Chromosome:chromosome 12
Location:3811785
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g514700 PPHC1,PPH Pheophytinase 1, chloroplastic; (1 of 1) PTHR10992:SF879 - PHEOPHYTINASE, CHLOROPLASTIC 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCACTCACTGTTCATGCGGTACCCGACCAACGAACAGGATCCTTTACACC
Internal bar code:TCCTTTCTTATGGGTGTCATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2318
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:GATAATCAGGGCCCTGGTCG
Suggested primer 2:TGCTTCAGGTCGGTGTTCTC