Insertion junction: CLIP2.062453_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.062453
Chromosome:chromosome 12
Location:792682
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g492200 (1 of 6) 3.4.22.69 - SARS coronavirus main proteinase / Severe acute respiratory syndrome coronavirus main protease 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CTTATCAAGATGCATGCATGTGCTGGTTTGTCCAATGCCAACGTTCTAGA
Internal bar code:AAGGTATCCACGGGGTGTTTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:1564
LEAP-Seq percent confirming:94.7368
LEAP-Seq n confirming:36
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:38

Suggested primers for confirmation by PCR

Suggested primer 1:ACCATGTCCGAAGCTGTCAG
Suggested primer 2:CACGGCTGATTCATGCGAAG