Insertion junction: CLIP2.062547_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.062547
Chromosome:chromosome 16
Location:636081
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g691900 PUS19 RNA pseudouridine synthase; (1 of 1) PTHR11142:SF9 - TRNA PSEUDOURIDINE SYNTHASE 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCGATGTGCTGCATTGCACGGGTCTGGAGGGTCTGGTTGGAGGCTGGGG
Internal bar code:GGTTCAGGTTACAGCCCTCCTG

Confirmation - LEAP-Seq

LEAP-Seq distance:3540
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:65
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:65

Suggested primers for confirmation by PCR

Suggested primer 1:ACACGTTGGCAAATGCACTC
Suggested primer 2:TCCTGCCCCATAACGCATAC