Insertion junction: CLIP2.062612_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.062612
Chromosome:chromosome 11
Location:926971
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g467656 (1 of 9) IPR007112//IPR009009 - Expansin/pollen allergen, DPBB domain // RlpA-like double-psi beta-barrel domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGTCCACCTTCCAGATGTTTAGGATGCCGGACCAATGAAGTTGCCACAAC
Internal bar code:CCAAACAAAGAAGTTACGTTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1161
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:12
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:12

Suggested primers for confirmation by PCR

Suggested primer 1:GTTCTGCCTGGACGAACTCA
Suggested primer 2:CTTTGTGACCAACGCCCTTG