Insertion junction: CLIP2.062625_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.062625
Chromosome:chromosome 3
Location:2901226
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g162650 (1 of 3) 1.5.1.5//3.5.4.9 - Methylenetetrahydrofolate dehydrogenase (NADP(+)) // Methenyltetrahydrofolate cyclohydrolase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGGCGGCAGCGGCGGCGACGTGTGGAGGTGGGCGGCACAGCGCTTGCAGA
Internal bar code:AGGGCACAGTGAGATAGTGGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1260
LEAP-Seq percent confirming:55.1724
LEAP-Seq n confirming:16
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:29

Suggested primers for confirmation by PCR

Suggested primer 1:CCTTCTCCTAGCGCGGTAAG
Suggested primer 2:CTCACTTTGTGGGCGGTTTG