Insertion junction: CLIP2.062701_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.062701
Chromosome:chromosome 9
Location:4161086
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre09.g399626 (1 of 1) K09919 - hypothetical protein (K09919) 3'UTR
Cre09.g399663 FXL7,FXL4 FixL-like PAS domain protein; (1 of 11) PF13426 - PAS domain (PAS_9) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCTGTGGTGCATGGAATGGTAAGACTAGGAGCGAAGCGAGTTAGCGAGTC
Internal bar code:GGCGGTCCTCCTTGGCGCGCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:1968
LEAP-Seq percent confirming:63.6364
LEAP-Seq n confirming:21
LEAP-Seq n nonconfirming:12
LEAP-Seq n unique pos:33

Suggested primers for confirmation by PCR

Suggested primer 1:GCTCGATTTGTGGTCGCATC
Suggested primer 2:CGTACTCGCATGCCTCTCTT