Insertion junction: CLIP2.062800_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.062800
Chromosome:chromosome 3
Location:8923352
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g204689 PDE21 (1 of 17) 3.1.4.53 - 3',5'-cyclic-AMP phosphodiesterase / cAMP-specific phosphodiesterase; 3'%252C5'-cyclic-nucleotide phosphodiesterase outside_mRNA
Cre03.g204801 (1 of 1) K10606 - E3 ubiquitin-protein ligase FANCL (FANCL, PHF9) 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTACATATCAGCGCGCGGTTACGACTTGAGACGAAGACTGCCCCTTTCA
Internal bar code:TCGTATCACAGCTGCGGCTCGA

Confirmation - LEAP-Seq

LEAP-Seq distance:1751
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:41
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:AGACGTGTGTGGGTTTGTGT
Suggested primer 2:CAAACGTAGAGGCTGCTGGA