Insertion junction: CLIP2.062813_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.062813
Chromosome:chromosome 16
Location:4484446
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g667700 (1 of 3) IPR000104//IPR005069 - Antifreeze protein, type I // Nucleotide-diphospho-sugar transferase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCCTCAGGATCACGGCCCTCAGGTGGCACCATCACAAGGTTTGTATCAC
Internal bar code:AGACGGTCATCGGGCCACACCC

Confirmation - LEAP-Seq

LEAP-Seq distance:922
LEAP-Seq percent confirming:87.5
LEAP-Seq n confirming:14
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:16

Suggested primers for confirmation by PCR

Suggested primer 1:GTGCCCAGTTGAACAAGCTG
Suggested primer 2:CATACACCTCGGGCTCATCC