Insertion junction: CLIP2.062866_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.062866
Chromosome:chromosome 16
Location:5021131
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g686100 (1 of 19) PTHR31251//PTHR31251:SF1 - FAMILY NOT NAMED // SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 10-RELATED 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCACCCGGGTTCCCACACACTTCACTTGCTACCACGCTGCTGCGACGAC
Internal bar code:GTCAGGGGTAGCACTGGGACGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2470
LEAP-Seq percent confirming:93.1818
LEAP-Seq n confirming:41
LEAP-Seq n nonconfirming:3
LEAP-Seq n unique pos:44

Suggested primers for confirmation by PCR

Suggested primer 1:CACCCCAGCTCTGCTATAGC
Suggested primer 2:GAGGAGTGTGGTGTCGTCAG