Insertion junction: CLIP2.063006_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.063006
Chromosome:chromosome 2
Location:2520374
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g092150 CSL (1 of 1) PTHR23155//PTHR23155:SF444 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN // SUBFAMILY NOT NAMED; Chlamydomonas SHOC2/SUR8-like LRR 5'UTR
Cre02.g092200 QAD1 (1 of 8) IPR011047//IPR018391 - Quinonprotein alcohol dehydrogenase-like superfamily // Pyrrolo-quinoline quinone beta-propeller repeat; Quinonprotein alcohol dehydrogenase-like protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CATCGCGGACTGTGTCCTACACCTAAAGTAGTTTATTGCTGACCGACATG
Internal bar code:CGATGATAACTGGGGTCGGTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:2156
LEAP-Seq percent confirming:76.6667
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:30

Suggested primers for confirmation by PCR

Suggested primer 1:CTACCATCCTGTCAGGGGGA
Suggested primer 2:CTTCGGCAGTGTGGTCATCT