Insertion junction: CLIP2.063113_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.063113
Chromosome:chromosome 12
Location:685279
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g493000 (1 of 1) IPR006153//IPR020846 - Cation/H+ exchanger // Major facilitator superfamily domain 3'UTR
Cre12.g801351 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTGGAATGAGAGGCGGCTCTAGCAGTTCTCAGACGAGACCTATATCCTC
Internal bar code:TTGGGTAAGGGCTAGTATTGAA

Confirmation - LEAP-Seq

LEAP-Seq distance:1011
LEAP-Seq percent confirming:58.8235
LEAP-Seq n confirming:10
LEAP-Seq n nonconfirming:7
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:CACCGAACCTACACGTGACA
Suggested primer 2:CACCCCATTCTCTGTGCCAT