Insertion junction: CLIP2.063170_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.063170
Chromosome:chromosome 3
Location:6524763
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre03.g194100 MAPKKK3 (1 of 1) PF14381 - Ethylene-responsive protein kinase Le-CTR1 (EDR1); Mitogen-Activated Protein Kinase Kinase Kinase outside_mRNA
Cre03.g800364 (1 of 3) PTHR23257:SF518 - DUAL SPECIFICITY PROTEIN KINASE SHKD 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTTTAGGCAGGTTGTTGGAAGCAAAGCAGGTGTCCGAGAGAGGGGGCGG
Internal bar code:ACGAAACATCCTTAGGGTACCA

Confirmation - LEAP-Seq

LEAP-Seq distance:2525
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:58
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:58

Suggested primers for confirmation by PCR

Suggested primer 1:CAGTCAATCCACGCACCTCT
Suggested primer 2:GGGCTGAGCAAGGTCAAGAT