Insertion junction: CLIP2.063215_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.063215
Chromosome:chromosome 11
Location:3067578
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre11.g474850 PUS17 (1 of 2) 5.4.99.29 - 23S rRNA pseudouridine(746) synthase / 23S RNA Psi(746) synthase; RNA pseudouridine synthase outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTCCGGACAAATACCGGTGGGGCTGAATATCAAGTTGTATGACAGCCAT
Internal bar code:TGATCCGATCAGTAGTGTATGT

Confirmation - LEAP-Seq

LEAP-Seq distance:2136
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:23
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:23

Suggested primers for confirmation by PCR

Suggested primer 1:GGCGCTATACGTGGCTGTAT
Suggested primer 2:GTAGTATAGCGCCCCGAACC