Insertion junction: CLIP2.063286_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.063286
Chromosome:chromosome 2
Location:5143271
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g111650 CGL8 (1 of 2) PTHR10783//PTHR10783:SF44 - XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED // SPX DOMAIN-CONTAINING PROTEIN 1-RELATED; SPX containing protein 5'UTR
Cre02.g111700 EFH1 (1 of 3) PF13202//PF13499 - EF hand (EF-hand_5) // EF-hand domain pair (EF-hand_7); EF-hand Calcium binding protein 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTCAGTTGCGCCCATAATTCACACTCGGCTGTGCTCCTGCTCGGTCAGAA
Internal bar code:GCCACTAGAGTATATTCACCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1454
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:39
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:39

Suggested primers for confirmation by PCR

Suggested primer 1:AGCTGAATGACGCAGGTCTC
Suggested primer 2:GTGCGTGCTTGTGTGCTAAA