Insertion junction: CLIP2.063396_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.063396
Chromosome:chromosome 2
Location:7835422
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre02.g146200 (1 of 89) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) 3'UTR
Cre02.g146250 NFS1,NIFS1,CSD1 (1 of 1) PTHR11601:SF34 - CYSTEINE DESULFURASE, MITOCHONDRIAL; Cysteine desulfurase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCATGGATGCGGATTCAAAACGTCAGGGTCAGCGCCCTGAATCAGACCAC
Internal bar code:TAAAGGTTCCACAATTACGTAG

Confirmation - LEAP-Seq

LEAP-Seq distance:648
LEAP-Seq percent confirming:75.0
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:5
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:CCAATGCACTGGTGTGTGTG
Suggested primer 2:GACTTGTTGGTCGGTGTTGC