Insertion junction: CLIP2.063400_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.063400
Chromosome:chromosome 10
Location:1554752
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g428900 RRM9,CGL72 (1 of 1) 2.1.1.226 - 23S rRNA (cytidine(1920)-2'-O)-methyltransferase; Conserved in the Green Lineage 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGTGCCATAGATATACATATGCGCAAACTTGTCCAGGCACGCCTTAGCCC
Internal bar code:CCAGCCGCGAGTAATTGGAGTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1972
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:74
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:74

Suggested primers for confirmation by PCR

Suggested primer 1:TAGTCACCACTTTGTCCGCC
Suggested primer 2:TGTGCACGATGGAACGAGAA