Insertion junction: CLIP2.063500_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.063500
Chromosome:chromosome 17
Location:5606793
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g739900 (1 of 1) IPR012337//IPR027417 - Ribonuclease H-like domain // P-loop containing nucleoside triphosphate hydrolase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ACCCGTGACCTACCCGTGACAAAGATGGGACCGTTGGCCCATTTAAGGCG
Internal bar code:CTATAACCGCTTCATGTCGTAT

Confirmation - LEAP-Seq

LEAP-Seq distance:5904
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:87
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:87

Suggested primers for confirmation by PCR

Suggested primer 1:TTTGTCGGTGGTCTGGCTAC
Suggested primer 2:CAACACGTCAACACCTGCAG