Insertion junction: CLIP2.063543_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.063543
Chromosome:chromosome 5
Location:273074
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre05.g800512 (1 of 1) IPR011010//IPR013762//IPR023109 - DNA breaking-rejoining enzyme, catalytic core // Integrase-like, catalytic domain // Integrase/recombinase, N-terminal 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCGTGCCTGGCCCACAACTGTCACCCGTGCTTCTCAACCTCCCTCCCTAT
Internal bar code:ACTGGCAGCGGTCCACTGGAGG

Confirmation - LEAP-Seq

LEAP-Seq distance:1457
LEAP-Seq percent confirming:45.8333
LEAP-Seq n confirming:11
LEAP-Seq n nonconfirming:13
LEAP-Seq n unique pos:24

Suggested primers for confirmation by PCR

Suggested primer 1:CGGGACCTGAGCGTGTATAC
Suggested primer 2:CGTCTCTGTCTCCGATCGTG