Insertion junction: CLIP2.063567_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.063567
Chromosome:chromosome 12
Location:2332975
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre12.g508100 (1 of 2) PTHR21580//PTHR21580:SF21 - SHIPPO-1-RELATED // O(6)-METHYLGUANINE-INDUCED APOPTOSIS 2 3'UTR
Cre12.g508150 SRH21 (1 of 1) PTHR10799//PTHR10799:SF691 - SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED // MYB DOMAIN-CONTAINING PROTEIN-RELATED; SNF2-related DNA/RNA helicase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GACCTGACCTGCATACCCTGTAACTTATGCTTGGAGCATCCCAAGCATGC
Internal bar code:GGGTCCGGGCGCGGTTTATCAT

Confirmation - LEAP-Seq

LEAP-Seq distance:3901
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:61
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:61

Suggested primers for confirmation by PCR

Suggested primer 1:AAGAAGGGCTTCACCATGGG
Suggested primer 2:ACGAAGAGAGAGGTTTGGCG