Insertion junction: CLIP2.063580_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.063580
Chromosome:chromosome 7
Location:1150818
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre07.g320900 (1 of 1) PTHR20883//PTHR20883:SF5 - PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 // SUBFAMILY NOT NAMED 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATCCTCACTTCCTCGCTTTTTCAAATAGGCATAGTCGCATTCAACATAGT
Internal bar code:ATCGACACCCACTAATGGGTCA

Confirmation - LEAP-Seq

LEAP-Seq distance:1086
LEAP-Seq percent confirming:68.0
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:8
LEAP-Seq n unique pos:25

Suggested primers for confirmation by PCR

Suggested primer 1:AGAGTGAAGTGGTGCTGACG
Suggested primer 2:ATTTCCATGGCCACTCCCTG