Insertion junction: CLIP2.063667_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:+
Strain:CLIP2.063667
Chromosome:chromosome 3
Location:6569731
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre03.g194500 (1 of 2) IPR000719//IPR011009//IPR013221 - Protein kinase domain // Protein kinase-like domain // Mur ligase, central intron
Cre03.g194517 (1 of 34) IPR001878 - Zinc finger, CCHC-type 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AACTATAACGGGTAGCTCTCTGGCTTATACCCTCGCATGGGTTCCGGGTC
Internal bar code:GAAGTTATCTTATGACCGCTAA

Confirmation - LEAP-Seq

LEAP-Seq distance:3650
LEAP-Seq percent confirming:36.1702
LEAP-Seq n confirming:17
LEAP-Seq n nonconfirming:30
LEAP-Seq n unique pos:47

Suggested primers for confirmation by PCR

Suggested primer 1:TTTCGCGGCTCTGAACTCTT
Suggested primer 2:AGAACTCCTCTGCAATGGCC