Insertion junction: CLIP2.063714_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.063714
Chromosome:chromosome 6
Location:6266345
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g292350 AOC4 (1 of 1) PTHR11785//PTHR11785:SF355 - AMINO ACID TRANSPORTER // SUBFAMILY NOT NAMED; Amino acid carrier 5'UTR
Cre06.g292400 SOUL5 (1 of 8) PF10184 - Uncharacterized conserved protein (DUF2358) (DUF2358); DUF2358 domain protein 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AATCGGGTGATAATTTCAGGGAGGGCGCAGGTCCCGCAATCGGGCCGATG
Internal bar code:AAGTCCAAGGCTATGGTCTTCG

Confirmation - LEAP-Seq

LEAP-Seq distance:1229
LEAP-Seq percent confirming:90.0
LEAP-Seq n confirming:9
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:10

Suggested primers for confirmation by PCR

Suggested primer 1:TCGACACACCAGTTCGTCAG
Suggested primer 2:GCGGATTGAAGCCAGGATCT