Insertion junction: CLIP2.063792_1

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.063792
Chromosome:plastome
Location:169607
Confidence (%):63
Locus systematic id Locus common name Defline Feature
CreCp.g802325 rps12,ChreCp060,2717036 (1 of 2) IPR005679 - Ribosomal protein S12, bacteria; 30S ribosomal protein S12 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TAAAATTTAAACGCTCTTTAATCACGTGATTAAAGAGCGTTTAAATTTTA
Internal bar code:CGAGCTCGTATTTGTAAGTCCA

Confirmation - LEAP-Seq

LEAP-Seq distance:50
LEAP-Seq percent confirming:11.5385
LEAP-Seq n confirming:6
LEAP-Seq n nonconfirming:46
LEAP-Seq n unique pos:52

Suggested primers for confirmation by PCR

Suggested primer 1:GGCGAGTTAGTAGCGGTACC
Suggested primer 2:ATCTTGTCCACAACGTCGTG