Insertion junction: CLIP2.063816_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.063816
Chromosome:chromosome 5
Location:2444876
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre05.g238900 HEL25 (1 of 1) K14779 - ATP-dependent RNA helicase DDX52/ROK1 [EC:3.6.4.13] (DDX52, ROK1); DEAD/DEAH box helicase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GCTATTGCAACTGAGCTGGCGCCAACTTCAGCTGTGTGCGCGTGGGCGAT
Internal bar code:AGGTATGGTGTAAGTGGGGCGC

Confirmation - LEAP-Seq

LEAP-Seq distance:416
LEAP-Seq percent confirming:33.3333
LEAP-Seq n confirming:2
LEAP-Seq n nonconfirming:4
LEAP-Seq n unique pos:6

Suggested primers for confirmation by PCR

Suggested primer 1:CTGGGTGATGCAGGCACTAA
Suggested primer 2:CGAGCTAGGGATGGCATCTG