Insertion junction: CLIP2.063838_2

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.063838
Chromosome:chromosome 17
Location:2760823
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre17.g717850 PHC8 (1 of 1) IPR003882//IPR024616//IPR027417 - Pistil-specific extensin-like protein // Pherophorin // P-loop containing nucleoside triphosphate hydrolase; Pherophorin-chlamydomonas homolog 8 outside_mRNA

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CGCGCTCCTCACGTGGGCTTCCCCGATGGACCTCCCCCGGTTGACTTCGT
Internal bar code:TACTTGTTTGGTCCAATGTGCG

Confirmation - LEAP-Seq

LEAP-Seq distance:3338
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:41
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:41

Suggested primers for confirmation by PCR

Suggested primer 1:TGAACAAAAGCGCTCGTGTG
Suggested primer 2:TCGAAGGAACCCTGAACGTG