Insertion junction: CLIP2.063847_2

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:+
Strain:CLIP2.063847
Chromosome:chromosome 8
Location:2036367
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre08.g368900 TSA2 (1 of 1) PTHR11777//PTHR11777:SF14 - ALANYL-TRNA SYNTHETASE // ALANINE--TRNA LIGASE, CHLOROPLASTIC-RELATED; Alanyl-tRNA-synthetase 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TACAAGGTACTCAGCCTTCTGAGCATTCACAGCACGCCCGTACGAGGCTT
Internal bar code:TGGAGCTGCCTTGATGCTTTTG

Confirmation - LEAP-Seq

LEAP-Seq distance:1378
LEAP-Seq percent confirming:97.8261
LEAP-Seq n confirming:45
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:46

Suggested primers for confirmation by PCR

Suggested primer 1:CTCTCTCCTCCTGCCTTCCT
Suggested primer 2:TGAGGAGGGATGGGGGTTAG