Insertion junction: CLIP2.063870_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:+
Strain:CLIP2.063870
Chromosome:chromosome 9
Location:1584214
Confidence (%):40
Locus systematic id Locus common name Defline Feature
Cre09.g398900 CWP1,GP1 (1 of 80) IPR003882 - Pistil-specific extensin-like protein; Vegetative cell wall protein gp1 5'UTR_intron

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): AGTCGCGCCTTGACCAGCTGCTGCGCCTCCGCTTCGTCGGTGCCCACAGT
Internal bar code:TCGAGTCTTCGAAGCTATGCGG

Confirmation - LEAP-Seq

LEAP-Seq distance:538
LEAP-Seq percent confirming:88.8889
LEAP-Seq n confirming:8
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:9

Suggested primers for confirmation by PCR

Suggested primer 1:AGGGCAGTTGAAGATACCGC
Suggested primer 2:GATGTCGACCAGTAGAGCGG