Insertion junction: CLIP2.063890_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.063890
Chromosome:chromosome 6
Location:2184149
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g266350 (1 of 1) PF00400//PF01753//PF12937 - WD domain, G-beta repeat (WD40) // MYND finger (zf-MYND) // F-box-like (F-box-like) 5'UTR
Cre06.g266383 HEL26 (1 of 1) K18995 - ATP-dependent RNA helicase DHX29 [EC:3.6.4.13] (DHX29); DEAD/DEAH box helicase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TGCTCCATTTGTTCGGTGCTCGCAATTGTAACTTGCATCACCAAACTTGG
Internal bar code:TACGGTCAGAGACGGTTCAATG

Confirmation - LEAP-Seq

LEAP-Seq distance:1430
LEAP-Seq percent confirming:88.2353
LEAP-Seq n confirming:15
LEAP-Seq n nonconfirming:2
LEAP-Seq n unique pos:17

Suggested primers for confirmation by PCR

Suggested primer 1:GTCCTTTTGGCCTGTGCATG
Suggested primer 2:TGAAGTAGAAGCAAGGCGGG