Insertion junction: CLIP2.063898_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:+
Strain:CLIP2.063898
Chromosome:chromosome 11
Location:4437930
Confidence (%):63
Locus systematic id Locus common name Defline Feature
Cre11.g483351 PHC44 Putative pherophorin-chlamydomonas homolog; (1 of 1) IPR003072//IPR003882//IPR024616 - Orphan nuclear receptor, NOR1 type // Pistil-specific extensin-like protein // Pherophorin CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CCCAGCCCTCCTCCCTCGCCTGTGCCTCCGTCTCCCACGCCCCCCAGCCC
Internal bar code:GTCTTCTCTCAGAGCTGGAAAG

Confirmation - LEAP-Seq

LEAP-Seq distance:1549
LEAP-Seq percent confirming:5.0
LEAP-Seq n confirming:1
LEAP-Seq n nonconfirming:19
LEAP-Seq n unique pos:20

Suggested primers for confirmation by PCR

Suggested primer 1:GAGGGAGGAGGGTAAGGAGG
Suggested primer 2:GGTTAAGCCATGCTGATGCG