Insertion junction: CLIP2.063931_2

Overview

Insertion cassette:CIB2
Side of cassette:5'
Strand:-
Strain:CLIP2.063931
Chromosome:chromosome 10
Location:3938102
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre10.g446750 (1 of 2) PTHR13690//PTHR13690:SF71 - FAMILY NOT NAMED // PROTEIN C37C3.9 outside_mRNA
Cre10.g446800 (1 of 3) IPR016087 - Chalcone isomerase 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GGGCTTGAGGTCGTTGAGCTCTTTTGCCACGTCCCCATCCACGTCCGGTT
Internal bar code:ACACCGTGCCGAGTCGTAGTTC

Confirmation - LEAP-Seq

LEAP-Seq distance:5228
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:108
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:108

Suggested primers for confirmation by PCR

Suggested primer 1:GCAAACTGTCGGTTTCCACC
Suggested primer 2:CTCGGCCGCTTTAGCAAATC