Insertion junction: CLIP2.063934_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.063934
Chromosome:chromosome 13
Location:1918372
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g575950 HIRA1,HIR1 (1 of 1) K11293 - protein HIRA/HIR1 (HIRA, HIR1); Histone transcription regulator 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TTTTTACGCGCTGTGAGGAGTGTGGGCCACAGGACTGCCCCCAATCCCCC
Internal bar code:TTAGAGAGCTGTTTCACCTTGT

Confirmation - LEAP-Seq

LEAP-Seq distance:1300
LEAP-Seq percent confirming:80.0
LEAP-Seq n confirming:4
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:5

Suggested primers for confirmation by PCR

Suggested primer 1:GTGGGAGGGGAAGAAATGGG
Suggested primer 2:CAGGTACCATGGGCGGATAC