Insertion junction: CLIP2.063979_2

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.063979
Chromosome:chromosome 1
Location:6046385
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre01.g042700 (1 of 140) IPR002048 - EF-hand domain 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): ATTTCATCTTCTCCTGTCTGCCCCTGTCGACGCGCCCGAATGCCCCAGTC
Internal bar code:TGAGTAGGAGGTTCCGCTCGGA

Confirmation - LEAP-Seq

LEAP-Seq distance:2386
LEAP-Seq percent confirming:97.8723
LEAP-Seq n confirming:46
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:47

Suggested primers for confirmation by PCR

Suggested primer 1:CGGAAGGCTGACTGTGAACT
Suggested primer 2:ACAAGGTGTCTCACTGAGCG