Insertion junction: CLIP2.064008_1

Overview

Insertion cassette:CIB2
Side of cassette:5' truncated?
Strand:-
Strain:CLIP2.064008
Chromosome:chromosome 13
Location:1692813
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre13.g574100 (1 of 6) PTHR10994//PTHR10994:SF72 - RETICULON // SUBFAMILY NOT NAMED outside_mRNA
Cre13.g574150 FAO10 FAD-dependent oxidoreductase; (1 of 1) 1.1.99.2 - L-2-hydroxyglutarate dehydrogenase / L-alpha-hydroxyglutarate dehydrogenase CDS

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): GTCATCGGTAGCTATGTCTTTCACGTTGACTGAGTTGACCATTACATGTC
Internal bar code:TCTACGCTTGGCTTTTTGATAT

Confirmation - LEAP-Seq

LEAP-Seq distance:2991
LEAP-Seq percent confirming:96.4286
LEAP-Seq n confirming:27
LEAP-Seq n nonconfirming:1
LEAP-Seq n unique pos:28

Suggested primers for confirmation by PCR

Suggested primer 1:CGTTTGGTTGGTTCGCATGT
Suggested primer 2:ATGACTGTCAAGCAAGCGGA