Insertion junction: CLIP2.064050_1

Overview

Insertion cassette:CIB2
Side of cassette:3'
Strand:-
Strain:CLIP2.064050
Chromosome:chromosome 16
Location:2255552
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre16.g658526 MNME1,TGD3,MNME (1 of 1) K03977 - GTP-binding protein (engA); Putative ABC transport system ATP-binding protein intron
Cre16.g801906 (1 of 1) PTHR24220//PTHR24220:SF441 - FAMILY NOT NAMED // PROTEIN TRIGALACTOSYLDIACYLGLYCEROL 3, CHLOROPLASTIC 5'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): TCAAGCCGCGGTCCGCACAGCTTTCCTTACTTCGCTAGTCGAACTTAAAA
Internal bar code:GGGTTAGCGCTAGGGAAGGTTT

Confirmation - LEAP-Seq

LEAP-Seq distance:3554
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:96
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:96

Suggested primers for confirmation by PCR

Suggested primer 1:GATGTAGGAGGAGATGCCGC
Suggested primer 2:ATCTACAACCCCTCCCCCTC