Insertion junction: CLIP2.064250_1

Overview

Insertion cassette:CIB2
Side of cassette:3' truncated?
Strand:-
Strain:CLIP2.064250
Chromosome:chromosome 6
Location:1104230
Confidence (%):80
Locus systematic id Locus common name Defline Feature
Cre06.g257600 FA1 (1 of 4) PF13516 - Leucine Rich repeat (LRR_6); Flagellar Autonomy Protein 3'UTR
Cre06.g257650 MSRA2 (1 of 2) PTHR10173//PTHR10173:SF34 - METHIONINE SULFOXIDE REDUCTASE // SUBFAMILY NOT NAMED; Peptide methionine-S-sulfoxide reductase, msrA-type 3'UTR

Insertion site details

Expected flanking sequence (starting at cassette; orientation from cassette outwards): CAATTAGTCAAATGGTCACTTCAGTTGCACGAAGCAGCAAGTGCTACCAA
Internal bar code:GACCTGAGTCAGGTCTAGTGGC

Confirmation - LEAP-Seq

LEAP-Seq distance:2191
LEAP-Seq percent confirming:100.0
LEAP-Seq n confirming:34
LEAP-Seq n nonconfirming:0
LEAP-Seq n unique pos:34

Suggested primers for confirmation by PCR

Suggested primer 1:GTATGATGGAGGAGGCGGTG
Suggested primer 2:GCGATGTACGAGGTGTTTGC